PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0053s0009.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 923aa    MW: 104673 Da    PI: 7.4954
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0053s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1162.57.8e-51301463118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e  +rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++n
  Cagra.0053s0009.1.p  30 DEaYTRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGNDN 119
                          45589************************************************************************************* PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          ptf rrcywlL++++e+ivlvhy+e++
  Cagra.0053s0009.1.p 120 PTFVRRCYWLLDKSQEHIVLVHYRETH 146
                          ************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.40525151IPR005559CG-1 DNA-binding domain
SMARTSM010767.1E-7328146IPR005559CG-1 DNA-binding domain
PfamPF038595.3E-4532144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.2E-13373459IPR014756Immunoglobulin E-set
CDDcd002041.31E-13559669No hitNo description
PfamPF127969.7E-7560639IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-15560672IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-15568679IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.292577672IPR020683Ankyrin repeat-containing domain
SMARTSM002482.7E-6610639IPR002110Ankyrin repeat
PROSITE profilePS5008811.808610642IPR002110Ankyrin repeat
PROSITE profilePS500966.595759785IPR000048IQ motif, EF-hand binding site
SMARTSM00015260774796IPR000048IQ motif, EF-hand binding site
SMARTSM000152.5E-4797819IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.237798822IPR000048IQ motif, EF-hand binding site
PfamPF006123.2E-4800819IPR000048IQ motif, EF-hand binding site
SMARTSM000156.8873895IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.37874903IPR000048IQ motif, EF-hand binding site
PfamPF006120.22875895IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MAGVDSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHK FFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISDHLSPK LVAEDINSVV  180
RNTCNTGFEV RSNSLGARNH EIRLHEINTL DWDELLVPAD ISNQSHPTEE DMLYFTEQLE  240
TAPRGSAKQG NHLAGYNGSV DIPSFPGLED PVYQNNNSCG AGEFSSQHVH CGVESILQRR  300
NSNATVADQP GDALLNNGYG SQDSFGRWVN NFISDSPGSV DDPSLEAVYT PGQESSTTAV  360
SHSHSNAPEQ VFNITDVSPA WAYSTEKTKI LVTGFFHDSF QHFGRSNLFC ICGELRVPAE  420
FLQLGVYRCF LPPQSPGVVN LYLSVDGNKP VSQLFSFEHR SVPVIEKAIP QDDQLHKWEE  480
FEFQVRLAHL LFTSSNKISV LTSKISPDNL LEAKKLASRT SHLLNSWAYL MKSIQANEVP  540
FDQARDHLFE LTLKNRLKEW LLEKVIENRN TKEYDSKGLG VIHLCAVLGY TWSILLFSWA  600
NISLDFRDKH GWTALHWAAY YGREKMVAAL LSAGARPNLV TDPTKEFLGG CTPADLAQQK  660
GYDGLAAFLA EKCLVAQFKD MQVAGNISGN LETIKAEQSS NPGNANEEEQ SLKDTLAAYR  720
TAAEAAARIQ GAFREHELKV RSSAVRFASK EEEAKNIIAA MKIQHAFRNF ETRRKIAAAA  780
RIQYRFQTWK MRREFLNMRN KAIRIQAAFR GYQVRRQYQK ITWSVGVLEK AILRWRLKRK  840
GFRGLQVSQP EKKEGDEEVE DFYKTSQKQA EDRLERSVVK VQAMFRSKKA QQDYRRMKLA  900
HEEAQLEYDG MQELDQMAME ES*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1282950.0AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282550.10.0hypothetical protein CARUB_v10004090mg
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLR0GWD20.0R0GWD2_9BRAS; Uncharacterized protein
STRINGAT4G16150.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators